Pydio Cells Automated Install DB Errors

I seem to be getting this error every time I start. I am trying to automate the install for cloudron (cloudron.io). After going through the UI installer or CLI installed it doesn’t seem to work and throws the following error:

I’m running the binary from /app/code, which is read only. In the dockerfile I am making sure I set the followin environment var:
ENV CELLS_WORKING_DIR=/app/data

/app/data is the only writable directory here. Am I SOL here?

Repo: Sign in · GitLab

Logs after config:

Jul 03 16:52:09 2021-07-03T22:52:09.226Z INFO	pydio.gateway.proxy	Restarting proxy {"caddyfile": "\n\nhttp://0.0.0.0:8080 {\n\troot \"/app/data/static/install\"\n\tproxy /install 172.18.20.1:44515\n\n\t\n\t\n}\n\n\t "}
Jul 03 16:52:09 2021-07-03T22:52:09.726Z INFO	pydio.gateway.proxy	Restart done
Jul 03 16:52:09
Jul 03 16:52:09 Opening URL https://cells.atridad.dev in your browser. Please copy/paste it if the browser is not on the same machine.
Jul 03 16:54:52 2021-07-03T22:54:52.841Z INFO	pydio.rest.install	stopping
Jul 03 16:54:52 *****************************************************************
Jul 03 16:54:52 * Dynamic bind flag detected, overriding any configured sites *
Jul 03 16:54:52 *****************************************************************
Jul 03 16:54:52 2021-07-03T22:54:52.876Z INFO	pydio.grpc.statics	started
Jul 03 16:54:52 2021-07-03T22:54:52.876Z INFO	pydio.gateway.rest	started
Jul 03 16:54:52 2021-07-03T22:54:52.876Z INFO	pydio.grpc.data.objects	started
Jul 03 16:54:52 2021-07-03T22:54:52.876Z INFO	pydio.gateway.data	started
Jul 03 16:54:52 2021-07-03T22:54:52.876Z INFO	pydio.grpc.data.sync	started
Jul 03 16:54:52 mkdir /home/cloudron/.minio: read-only file system Unable to create configuration directories
Jul 03 16:54:52 file not found Failed to read root CAs (%v)
Jul 03 16:54:52 2021-07-03T22:54:52.877Z INFO	pydio.grpc.update	started
Jul 03 16:54:52 2021-07-03T22:54:52.877Z INFO	pydio.grpc.data.sync	Starting umbrella service pydio.grpc.data.sync. with sources {"sources": "pydiods1,personal,cellsdata"}
Jul 03 16:54:52 2021-07-03T22:54:52.877Z ERROR	pydio.grpc.healthcheck	Could not run {"error": "listen tcp: address tcp/<nil>: unknown port"}
Jul 03 16:54:52 2021-07-03T22:54:52.877Z INFO	pydio.grpc.data.objects	Starting umbrella service pydio.grpc.data.objects. with sources {"sources": "local1"}
Jul 03 16:54:52 2021-07-03T22:54:52.882Z INFO	pydio.grpc.log	started
Jul 03 16:54:52 2021-07-03T22:54:52.921Z INFO	pydio.grpc.config	started
Jul 03 16:54:52 2021-07-03T22:54:52.933Z INFO	pydio.grpc.docstore	started
Jul 03 16:54:52 2021-07-03T22:54:52.936Z INFO	pydio.grpc.chat	started
Jul 03 16:54:52 2021-07-03T22:54:52.964Z INFO	pydio.grpc.user-key	started
Jul 03 16:54:52 2021-07-03T22:54:52.972Z INFO	pydio.grpc.meta	started
Jul 03 16:54:53 2021-07-03T22:54:53.023Z INFO	pydio.grpc.user-meta	started
Jul 03 16:54:53 2021-07-03T22:54:53.023Z INFO	pydio.grpc.user-meta	Inserting default namespace for metadata
Jul 03 16:54:53 2021-07-03T22:54:53.031Z INFO	pydio.grpc.token	started
Jul 03 16:54:53 2021-07-03T22:54:53.041Z INFO	pydio.grpc.acl	started
Jul 03 16:54:53 2021-07-03T22:54:53.116Z INFO	pydio.grpc.data.sync.pydiods1	Sync pydiods1 - Try to contact Objects
Jul 03 16:54:53 2021-07-03T22:54:53.124Z INFO	pydio.grpc.data.sync.cellsdata	Sync cellsdata - Try to contact Objects
Jul 03 16:54:53 2021-07-03T22:54:53.125Z INFO	pydio.grpc.data.sync.personal	Sync personal - Try to contact Objects
Jul 03 16:54:53 2021-07-03T22:54:53.133Z INFO	pydio.grpc.jobs	started
Jul 03 16:54:53 2021-07-03T22:54:53.167Z INFO	pydio.grpc.data.objects.local1	started
Jul 03 16:54:53 2021-07-03T22:54:53.170Z INFO	pydio.grpc.data.objects.local1	Starting local objects service local1 on /app/data/data
Jul 03 16:54:53 2021-07-03T22:54:53.329Z INFO	pydio.grpc.data.sync.personal	Successfully listed objects from bucket personal
Jul 03 16:54:53 http://default
Jul 03 16:54:53 2021-07-03T22:54:53.681Z INFO	pydio.gateway.proxy	started
Jul 03 16:54:54 2021-07-03T22:54:54.879Z INFO	pydio.grpc.tree	started
Jul 03 16:54:54 2021-07-03T22:54:54.879Z INFO	pydio.grpc.mailer	Starting mailer with queue 'boltdb'
Jul 03 16:54:54 2021-07-03T22:54:54.880Z INFO	pydio.grpc.mailer	Starting mailer with sender 'smtp'
Jul 03 16:54:54 2021-07-03T22:54:54.882Z INFO	pydio.grpc.mailer	started
Jul 03 16:54:54 2021-07-03T22:54:54.882Z INFO	pydio.grpc.mailer	Registering default job for consuming mailer queue
Jul 03 16:54:54 2021-07-03T22:54:54.930Z INFO	pydio.grpc.workspace	started
Jul 03 16:54:54 2021-07-03T22:54:54.960Z INFO	pydio.grpc.role	started
Jul 03 16:54:55 2021-07-03T22:54:55.063Z INFO	pydio.grpc.data-key	started
Jul 03 16:54:55 2021-07-03T22:54:55.118Z INFO	pydio.grpc.tasks	started
Jul 03 16:54:55 2021-07-03T22:54:55.121Z INFO	pydio.gateway.websocket	started
Jul 03 16:54:56 2021-07-03T22:54:56.876Z INFO	pydio.gateway.grpc.clear	Starting HTTP only gRPC gateway. Will be accessed directly through port 43545
Jul 03 16:54:56 2021-07-03T22:54:56.877Z INFO	pydio.grpc.data.index	started
Jul 03 16:54:56 2021-07-03T22:54:56.877Z INFO	pydio.gateway.grpc.clear	started
Jul 03 16:54:56 2021-07-03T22:54:56.878Z INFO	pydio.grpc.data.index	Starting umbrella service pydio.grpc.data.index. with sources {"sources": "pydiods1,personal,cellsdata"}
Jul 03 16:54:56 2021-07-03T22:54:56.879Z INFO	pydio.grpc.timer	Registering Job {"job": "flush-mailer-queue"}
Jul 03 16:54:56 2021-07-03T22:54:56.879Z INFO	pydio.grpc.timer	Registering Job {"job": "internal-prune-jobs"}
Jul 03 16:54:56 2021-07-03T22:54:56.880Z INFO	pydio.grpc.timer	started
Jul 03 16:54:56 2021-07-03T22:54:56.884Z INFO	pydio.grpc.activity	started
Jul 03 16:54:56 2021-07-03T22:54:56.885Z INFO	pydio.grpc.activity	Registering default job for creating activities digests
Jul 03 16:54:56 2021-07-03T22:54:56.899Z INFO	pydio.grpc.versions	started
Jul 03 16:54:56 2021-07-03T22:54:56.899Z INFO	pydio.grpc.versions	Inserting default versioning policies
Jul 03 16:54:57 ==> Starting Pydio
Jul 03 16:54:58 2021-07-03T22:54:58.693Z INFO	pydio.gateway.data	started
Jul 03 16:54:58 2021-07-03T22:54:58.693Z INFO	pydio.grpc.data.sync	started
Jul 03 16:54:58 2021-07-03T22:54:58.693Z INFO	pydio.grpc.data.objects	started
Jul 03 16:54:58 2021-07-03T22:54:58.693Z INFO	pydio.grpc.data.sync	Starting umbrella service pydio.grpc.data.sync. with sources {"sources": "pydiods1,personal,cellsdata"}
Jul 03 16:54:58 2021-07-03T22:54:58.693Z INFO	pydio.grpc.data.objects	Starting umbrella service pydio.grpc.data.objects. with sources {"sources": "local1"}
Jul 03 16:54:58 2021-07-03T22:54:58.693Z INFO	pydio.gateway.rest	started
Jul 03 16:54:58 2021-07-03T22:54:58.693Z INFO	mkdir /home/cloudron/.minio: read-only file system Unable to create configuration directories
Jul 03 16:54:58 2021-07-03T22:54:58.693Z INFO	file not found Failed to read root CAs (%v)
Jul 03 16:54:58 2021-07-03T22:54:58.693Z INFO	pydio.grpc.update	started
Jul 03 16:54:58 2021-07-03T22:54:58.694Z INFO	pydio.grpc.statics	started
Jul 03 16:54:58 2021-07-03T22:54:58.697Z INFO	pydio.grpc.docstore	started
Jul 03 16:54:58 2021-07-03T22:54:58.701Z INFO	pydio.grpc.log	started
Jul 03 16:54:58 2021-07-03T22:54:58.708Z INFO	pydio.grpc.token	started
Jul 03 16:54:58 2021-07-03T22:54:58.712Z INFO	pydio.grpc.user-key	started
Jul 03 16:54:58 2021-07-03T22:54:58.713Z INFO	pydio.grpc.config	started
Jul 03 16:54:58 2021-07-03T22:54:58.714Z INFO	pydio.grpc.acl	started
Jul 03 16:54:58 2021-07-03T22:54:58.716Z INFO	pydio.grpc.meta	started
Jul 03 16:54:58 2021-07-03T22:54:58.716Z INFO	pydio.grpc.chat	started
Jul 03 16:54:58 2021-07-03T22:54:58.721Z INFO	pydio.grpc.user-meta	started
Jul 03 16:54:58 2021-07-03T22:54:58.932Z INFO	pydio.grpc.data.objects.local1	started
Jul 03 16:54:58 2021-07-03T22:54:58.934Z INFO	pydio.grpc.data.objects.local1	Starting local objects service local1 on /app/data/data
Jul 03 16:54:59 2021-07-03T22:54:59.002Z INFO	pydio.grpc.data.sync.pydiods1	Sync pydiods1 - Try to contact Objects
Jul 03 16:54:59 2021-07-03T22:54:59.004Z INFO	pydio.grpc.data.sync.personal	Sync personal - Try to contact Objects
Jul 03 16:54:59 2021-07-03T22:54:59.006Z INFO	pydio.grpc.data.sync.cellsdata	Sync cellsdata - Try to contact Objects
Jul 03 16:54:59 2021-07-03T22:54:59.011Z INFO	pydio.grpc.jobs	started
Jul 03 16:54:59 2021-07-03T22:54:59.082Z WARN	Failed to create consent schemas {"error": "Could not migrate sql schema, applied 0 migrations: Error 1061: Duplicate key name 'hydra_oauth2_obfuscated_authentication_session_so_idx' handling 5", "errorVerbose": "Error 1061: Duplicate key name 'hydra_oauth2_obfuscated_authentication_session_so_idx' handling 5\nCould not migrate sql schema, applied 0 migrations\ngithub.com/pydio/cells/vendor/github.com/ory/hydra/consent.(*SQLManager).CreateSchemas\n\tgithub.com/pydio/cells/vendor/github.com/ory/hydra/consent/manager_sql.go:64\ngithub.com/pydio/cells/common/auth.InitRegistry.func1\n\tgithub.com/pydio/cells/common/auth/registry.go:77\nsync.(*Once).doSlow\n\tsync/once.go:66\nsync.(*Once).Do\n\tsync/once.go:57\ngithub.com/pydio/cells/common/auth.InitRegistry\n\tgithub.com/pydio/cells/common/auth/registry.go:40\ngithub.com/pydio/cells/idm/oauth/grpc.initialize\n\tgithub.com/pydio/cells/idm/oauth/grpc/plugins.go:129\ngithub.com/pydio/cells/common/service.(*service).Start\n\tgithub.com/pydio/cells/common/service/service.go:505\nruntime.goexit\n\truntime/asm_amd64.s:1374"}
Jul 03 16:54:59 2021-07-03T22:54:59.106Z INFO	pydio.grpc.data.sync.pydiods1	Successfully listed objects from bucket pydiods1
Jul 03 16:54:59 2021-07-03T22:54:59.109Z INFO	pydio.grpc.data.sync.cellsdata	Successfully listed objects from bucket cellsdata
Jul 03 16:54:59 2021-07-03T22:54:59.120Z INFO	pydio.grpc.policy	started
Jul 03 16:54:59 2021-07-03T22:54:59.208Z INFO	pydio.grpc.data.sync.personal	Successfully listed objects from bucket personal
Jul 03 16:54:59 2021-07-03T22:54:59.290Z INFO	pydio.grpc.policy	Inserted default policies
Jul 03 16:54:59 2021-07-03T22:54:59.349Z INFO	pydio.grpc.oauth	started
Jul 03 16:54:59 2021-07-03T22:54:59.456Z INFO	pydio.grpc.oauth	Inserting pruning job for revoked token and reset password tokens
Jul 03 16:54:59 2021-07-03T22:54:59.501Z INFO	Activating privacy features... done.
Jul 03 16:54:59 2021-07-03T22:54:59.501Z INFO	http://0.0.0.0:8080
Jul 03 16:54:59 2021-07-03T22:54:59.501Z INFO	pydio.gateway.proxy	started
Jul 03 16:55:00 2021-07-03T22:55:00.694Z INFO	pydio.grpc.tree	started
Jul 03 16:55:00 2021-07-03T22:55:00.695Z INFO	pydio.grpc.mailer	Starting mailer with queue 'boltdb'
Jul 03 16:55:00 2021-07-03T22:55:00.696Z INFO	pydio.grpc.mailer	Starting mailer with sender 'smtp'
Jul 03 16:55:00 2021-07-03T22:55:00.696Z INFO	pydio.grpc.mailer	started
Jul 03 16:55:00 2021-07-03T22:55:00.697Z INFO	pydio.grpc.data-key	started
Jul 03 16:55:00 2021-07-03T22:55:00.698Z INFO	pydio.grpc.workspace	started
Jul 03 16:55:00 2021-07-03T22:55:00.698Z INFO	pydio.grpc.role	started
Jul 03 16:55:00 2021-07-03T22:55:00.932Z INFO	pydio.grpc.tasks	started
Jul 03 16:55:00 2021-07-03T22:55:00.950Z INFO	pydio.gateway.websocket	started
Jul 03 16:55:02 2021-07-03T22:55:02.693Z INFO	pydio.gateway.grpc.clear	Starting HTTP only gRPC gateway. Will be accessed directly through port 45843
Jul 03 16:55:02 2021-07-03T22:55:02.693Z INFO	pydio.grpc.data.index	started
Jul 03 16:55:02 2021-07-03T22:55:02.694Z INFO	pydio.gateway.grpc.clear	started
Jul 03 16:55:02 2021-07-03T22:55:02.694Z INFO	pydio.grpc.data.index	Starting umbrella service pydio.grpc.data.index. with sources {"sources": "pydiods1,personal,cellsdata"}
Jul 03 16:55:02 2021-07-03T22:55:02.695Z INFO	pydio.grpc.timer	Registering Job {"job": "actions.auth.prune.tokens"}
Jul 03 16:55:02 2021-07-03T22:55:02.695Z INFO	pydio.grpc.timer	Registering Job {"job": "flush-mailer-queue"}
Jul 03 16:55:02 2021-07-03T22:55:02.696Z INFO	pydio.grpc.timer	Registering Job {"job": "internal-prune-jobs"}
Jul 03 16:55:02 2021-07-03T22:55:02.697Z INFO	pydio.grpc.timer	Registering Job {"job": "prune-versions-job"}
Jul 03 16:55:02 2021-07-03T22:55:02.700Z INFO	pydio.grpc.timer	Registering Job {"job": "users-activity-digest"}
Jul 03 16:55:02 2021-07-03T22:55:02.702Z INFO	pydio.grpc.timer	started
Jul 03 16:55:02 2021-07-03T22:55:02.703Z INFO	pydio.grpc.versions	started
Jul 03 16:55:02 2021-07-03T22:55:02.705Z INFO	pydio.grpc.activity	started
Jul 03 16:55:02 2021-07-03T22:55:02.707Z INFO	pydio.grpc.versions	Inserting default versioning policies
Jul 03 16:55:03 ==> Starting Pydio
Jul 03 16:55:04 2021-07-03T22:55:04.820Z INFO	pydio.gateway.rest	started
Jul 03 16:55:04 2021-07-03T22:55:04.820Z INFO	pydio.grpc.data.sync	started
Jul 03 16:55:04 2021-07-03T22:55:04.821Z INFO	pydio.gateway.data	started
Jul 03 16:55:04 2021-07-03T22:55:04.821Z INFO	pydio.grpc.data.sync	Starting umbrella service pydio.grpc.data.sync. with sources {"sources": "pydiods1,personal,cellsdata"}
Jul 03 16:55:04 2021-07-03T22:55:04.821Z INFO	pydio.grpc.data.objects	started
Jul 03 16:55:04 2021-07-03T22:55:04.821Z INFO	mkdir /home/cloudron/.minio: read-only file system Unable to create configuration directories
Jul 03 16:55:04 2021-07-03T22:55:04.821Z INFO	file not found Failed to read root CAs (%v)
Jul 03 16:55:04 2021-07-03T22:55:04.821Z INFO	pydio.grpc.statics	started
Jul 03 16:55:04 2021-07-03T22:55:04.822Z INFO	pydio.grpc.update	started
Jul 03 16:55:04 2021-07-03T22:55:04.825Z INFO	pydio.grpc.log	started
Jul 03 16:55:04 2021-07-03T22:55:04.825Z INFO	pydio.grpc.data.objects	Starting umbrella service pydio.grpc.data.objects. with sources {"sources": "local1"}
Jul 03 16:55:04 2021-07-03T22:55:04.827Z INFO	pydio.grpc.docstore	started
Jul 03 16:55:04 2021-07-03T22:55:04.831Z INFO	pydio.grpc.config	started
Jul 03 16:55:04 2021-07-03T22:55:04.835Z INFO	pydio.grpc.token	started
Jul 03 16:55:04 2021-07-03T22:55:04.847Z INFO	pydio.grpc.policy	started
Jul 03 16:55:04 2021-07-03T22:55:04.847Z INFO	pydio.grpc.chat	started
Jul 03 16:55:04 2021-07-03T22:55:04.847Z INFO	pydio.grpc.user-key	started
Jul 03 16:55:04 2021-07-03T22:55:04.849Z INFO	pydio.grpc.acl	started
Jul 03 16:55:04 2021-07-03T22:55:04.852Z INFO	pydio.grpc.meta	started
Jul 03 16:55:04 2021-07-03T22:55:04.858Z INFO	pydio.grpc.user-meta	started
Jul 03 16:55:04 2021-07-03T22:55:04.859Z WARN	Failed to create consent schemas {"error": "Could not migrate sql schema, applied 0 migrations: Error 1061: Duplicate key name 'hydra_oauth2_obfuscated_authentication_session_so_idx' handling 5", "errorVerbose": "Error 1061: Duplicate key name 'hydra_oauth2_obfuscated_authentication_session_so_idx' handling 5\nCould not migrate sql schema, applied 0 migrations\ngithub.com/pydio/cells/vendor/github.com/ory/hydra/consent.(*SQLManager).CreateSchemas\n\tgithub.com/pydio/cells/vendor/github.com/ory/hydra/consent/manager_sql.go:64\ngithub.com/pydio/cells/common/auth.InitRegistry.func1\n\tgithub.com/pydio/cells/common/auth/registry.go:77\nsync.(*Once).doSlow\n\tsync/once.go:66\nsync.(*Once).Do\n\tsync/once.go:57\ngithub.com/pydio/cells/common/auth.InitRegistry\n\tgithub.com/pydio/cells/common/auth/registry.go:40\ngithub.com/pydio/cells/idm/oauth/grpc.initialize\n\tgithub.com/pydio/cells/idm/oauth/grpc/plugins.go:129\ngithub.com/pydio/cells/common/service.(*service).Start\n\tgithub.com/pydio/cells/common/service/service.go:505\nruntime.goexit\n\truntime/asm_amd64.s:1374"}
Jul 03 16:55:04 2021-07-03T22:55:04.878Z INFO	pydio.grpc.oauth	started
Jul 03 16:55:05 2021-07-03T22:55:05.067Z INFO	pydio.grpc.jobs	started
Jul 03 16:55:05 2021-07-03T22:55:05.078Z INFO	pydio.grpc.data.objects.local1	started
Jul 03 16:55:05 2021-07-03T22:55:05.079Z INFO	pydio.grpc.data.objects.local1	Starting local objects service local1 on /app/data/data
Jul 03 16:55:05 2021-07-03T22:55:05.116Z INFO	pydio.grpc.data.sync.cellsdata	Sync cellsdata - Try to contact Objects
Jul 03 16:55:05 2021-07-03T22:55:05.116Z INFO	pydio.grpc.data.sync.pydiods1	Sync pydiods1 - Try to contact Objects
Jul 03 16:55:05 2021-07-03T22:55:05.120Z INFO	pydio.grpc.data.sync.personal	Sync personal - Try to contact Objects
Jul 03 16:55:05 2021-07-03T22:55:05.220Z INFO	pydio.grpc.data.sync.pydiods1	Successfully listed objects from bucket pydiods1
Jul 03 16:55:05 2021-07-03T22:55:05.320Z INFO	pydio.grpc.data.sync.cellsdata	Successfully listed objects from bucket cellsdata
Jul 03 16:55:05 2021-07-03T22:55:05.323Z INFO	pydio.grpc.data.sync.personal	Successfully listed objects from bucket personal
Jul 03 16:55:05 2021-07-03T22:55:05.625Z INFO	Activating privacy features... done.
Jul 03 16:55:05 2021-07-03T22:55:05.625Z INFO	http://0.0.0.0:8080
Jul 03 16:55:05 2021-07-03T22:55:05.626Z INFO	pydio.gateway.proxy	started
Jul 03 16:55:06 2021-07-03T22:55:06.821Z INFO	pydio.grpc.tree	started
Jul 03 16:55:06 2021-07-03T22:55:06.822Z INFO	pydio.grpc.mailer	Starting mailer with queue 'boltdb'
Jul 03 16:55:06 2021-07-03T22:55:06.822Z INFO	pydio.grpc.mailer	Starting mailer with sender 'smtp'
Jul 03 16:55:06 2021-07-03T22:55:06.823Z INFO	pydio.grpc.mailer	started
Jul 03 16:55:06 2021-07-03T22:55:06.824Z INFO	pydio.grpc.data-key	started
Jul 03 16:55:06 2021-07-03T22:55:06.826Z INFO	pydio.grpc.role	started
Jul 03 16:55:06 2021-07-03T22:55:06.827Z INFO	pydio.grpc.workspace	started
Jul 03 16:55:07 2021-07-03T22:55:07.062Z INFO	pydio.gateway.websocket	started
Jul 03 16:55:07 2021-07-03T22:55:07.122Z INFO	pydio.grpc.tasks	started
Jul 03 16:55:08 2021-07-03T22:55:08.820Z INFO	pydio.gateway.grpc.clear	Starting HTTP only gRPC gateway. Will be accessed directly through port 35855
Jul 03 16:55:08 2021-07-03T22:55:08.821Z INFO	pydio.grpc.data.index	started
Jul 03 16:55:08 2021-07-03T22:55:08.821Z INFO	pydio.grpc.data.index	Starting umbrella service pydio.grpc.data.index. with sources {"sources": "pydiods1,personal,cellsdata"}
Jul 03 16:55:08 2021-07-03T22:55:08.821Z INFO	pydio.gateway.grpc.clear	started
Jul 03 16:55:08 2021-07-03T22:55:08.828Z INFO	pydio.grpc.activity	started
Jul 03 16:55:09 ==> Starting Pydio
Jul 03 16:55:10 2021-07-03T22:55:10.957Z INFO	pydio.gateway.data	started
Jul 03 16:55:10 2021-07-03T22:55:10.957Z INFO	pydio.grpc.data.sync	started
Jul 03 16:55:10 2021-07-03T22:55:10.957Z INFO	pydio.gateway.rest	started
Jul 03 16:55:10 2021-07-03T22:55:10.957Z INFO	mkdir /home/cloudron/.minio: read-only file system Unable to create configuration directories
Jul 03 16:55:10 2021-07-03T22:55:10.957Z INFO	file not found Failed to read root CAs (%v)
Jul 03 16:55:10 2021-07-03T22:55:10.957Z INFO	pydio.grpc.data.sync	Starting umbrella service pydio.grpc.data.sync. with sources {"sources": "pydiods1,personal,cellsdata"}
Jul 03 16:55:10 2021-07-03T22:55:10.958Z INFO	pydio.grpc.update	started
Jul 03 16:55:10 2021-07-03T22:55:10.958Z INFO	pydio.grpc.statics	started
Jul 03 16:55:10 2021-07-03T22:55:10.962Z INFO	pydio.grpc.data.objects	started
Jul 03 16:55:10 2021-07-03T22:55:10.962Z INFO	pydio.grpc.log	started
Jul 03 16:55:10 2021-07-03T22:55:10.962Z INFO	pydio.grpc.data.objects	Starting umbrella service pydio.grpc.data.objects. with sources {"sources": "local1"}
Jul 03 16:55:10 2021-07-03T22:55:10.963Z INFO	pydio.grpc.docstore	started
Jul 03 16:55:10 2021-07-03T22:55:10.972Z INFO	pydio.grpc.config	started
Jul 03 16:55:10 2021-07-03T22:55:10.977Z INFO	pydio.grpc.acl	started
Jul 03 16:55:10 2021-07-03T22:55:10.978Z INFO	pydio.grpc.chat	started
Jul 03 16:55:10 2021-07-03T22:55:10.978Z INFO	pydio.grpc.token	started
Jul 03 16:55:10 2021-07-03T22:55:10.978Z INFO	pydio.grpc.user-key	started
Jul 03 16:55:10 2021-07-03T22:55:10.984Z INFO	pydio.grpc.meta	started
Jul 03 16:55:10 2021-07-03T22:55:10.988Z WARN	Failed to create consent schemas {"error": "Could not migrate sql schema, applied 0 migrations: Error 1061: Duplicate key name 'hydra_oauth2_obfuscated_authentication_session_so_idx' handling 5", "errorVerbose": "Error 1061: Duplicate key name 'hydra_oauth2_obfuscated_authentication_session_so_idx' handling 5\nCould not migrate sql schema, applied 0 migrations\ngithub.com/pydio/cells/vendor/github.com/ory/hydra/consent.(*SQLManager).CreateSchemas\n\tgithub.com/pydio/cells/vendor/github.com/ory/hydra/consent/manager_sql.go:64\ngithub.com/pydio/cells/common/auth.InitRegistry.func1\n\tgithub.com/pydio/cells/common/auth/registry.go:77\nsync.(*Once).doSlow\n\tsync/once.go:66\nsync.(*Once).Do\n\tsync/once.go:57\ngithub.com/pydio/cells/common/auth.InitRegistry\n\tgithub.com/pydio/cells/common/auth/registry.go:40\ngithub.com/pydio/cells/idm/oauth/grpc.initialize\n\tgithub.com/pydio/cells/idm/oauth/grpc/plugins.go:129\ngithub.com/pydio/cells/common/service.(*service).Start\n\tgithub.com/pydio/cells/common/service/service.go:505\nruntime.goexit\n\truntime/asm_amd64.s:1374"}
Jul 03 16:55:10 2021-07-03T22:55:10.992Z INFO	pydio.grpc.policy	started
Jul 03 16:55:10 2021-07-03T22:55:10.993Z INFO	pydio.grpc.user-meta	started
Jul 03 16:55:11 2021-07-03T22:55:11.004Z INFO	pydio.grpc.oauth	started
Jul 03 16:55:11 2021-07-03T22:55:11.190Z INFO	pydio.grpc.data.sync.pydiods1	Sync pydiods1 - Try to contact Objects
Jul 03 16:55:11 2021-07-03T22:55:11.246Z INFO	pydio.grpc.data.sync.personal	Sync personal - Try to contact Objects
Jul 03 16:55:11 2021-07-03T22:55:11.247Z INFO	pydio.grpc.data.objects.local1	started
Jul 03 16:55:11 2021-07-03T22:55:11.248Z INFO	pydio.grpc.data.sync.cellsdata	Sync cellsdata - Try to contact Objects
Jul 03 16:55:11 2021-07-03T22:55:11.250Z INFO	pydio.grpc.jobs	started
Jul 03 16:55:11 2021-07-03T22:55:11.251Z INFO	pydio.grpc.data.objects.local1	Starting local objects service local1 on /app/data/data
Jul 03 16:55:11 2021-07-03T22:55:11.393Z INFO	pydio.grpc.data.sync.pydiods1	Successfully listed objects from bucket pydiods1
Jul 03 16:55:11 2021-07-03T22:55:11.449Z INFO	pydio.grpc.data.sync.personal	Successfully listed objects from bucket personal
Jul 03 16:55:11 2021-07-03T22:55:11.451Z INFO	pydio.grpc.data.sync.cellsdata	Successfully listed objects from bucket cellsdata
Jul 03 16:55:11 2021-07-03T22:55:11.763Z INFO	Activating privacy features... done.
Jul 03 16:55:11 2021-07-03T22:55:11.764Z INFO	http://0.0.0.0:8080
Jul 03 16:55:11 2021-07-03T22:55:11.764Z INFO	pydio.gateway.proxy	started
Jul 03 16:55:12 2021-07-03T22:55:12.958Z INFO	pydio.grpc.mailer	Starting mailer with queue 'boltdb'
Jul 03 16:55:12 2021-07-03T22:55:12.958Z INFO	pydio.grpc.mailer	Starting mailer with sender 'smtp'
Jul 03 16:55:12 2021-07-03T22:55:12.959Z INFO	pydio.grpc.tree	started
Jul 03 16:55:12 2021-07-03T22:55:12.959Z INFO	pydio.grpc.mailer	started
Jul 03 16:55:12 2021-07-03T22:55:12.961Z INFO	pydio.grpc.data-key	started
Jul 03 16:55:12 2021-07-03T22:55:12.963Z INFO	pydio.grpc.role	started
Jul 03 16:55:12 2021-07-03T22:55:12.963Z INFO	pydio.grpc.workspace	started
Jul 03 16:55:13 2021-07-03T22:55:13.198Z INFO	pydio.gateway.websocket	started
Jul 03 16:55:13 2021-07-03T22:55:13.246Z INFO	pydio.grpc.tasks	started
Jul 03 16:55:14 2021-07-03T22:55:14.958Z INFO	pydio.gateway.grpc.clear	Starting HTTP only gRPC gateway. Will be accessed directly through port 35399
Jul 03 16:55:14 2021-07-03T22:55:14.958Z INFO	pydio.grpc.data.index	started
Jul 03 16:55:14 2021-07-03T22:55:14.959Z INFO	pydio.gateway.grpc.clear	started
Jul 03 16:55:14 2021-07-03T22:55:14.959Z INFO	pydio.grpc.data.index	Starting umbrella service pydio.grpc.data.index. with sources {"sources": "pydiods1,personal,cellsdata"}
Jul 03 16:55:14 2021-07-03T22:55:14.966Z ERROR	pydio.grpc.user	Failed to init DB provider {"error": "cannot initialise index DAO: Error 1060: Duplicate column name 'name' handling idm_user_idx_0.2.sql"}
Jul 03 16:55:14 2021-07-03T22:55:14.966Z ERROR	pydio.grpc.user	Could not run {"error": "cannot initialise index DAO: Error 1060: Duplicate column name 'name' handling idm_user_idx_0.2.sql"}
Jul 03 16:55:14 2021-07-03T22:55:14.966Z INFO	pydio.grpc.activity	started
Jul 03 16:55:16 ==> Starting Pydio
Jul 03 16:55:17 2021-07-03T22:55:17.488Z INFO	pydio.grpc.update	started
Jul 03 16:55:17 2021-07-03T22:55:17.488Z INFO	pydio.grpc.data.sync	started
Jul 03 16:55:17 2021-07-03T22:55:17.488Z INFO	pydio.grpc.data.sync	Starting umbrella service pydio.grpc.data.sync. with sources {"sources": "pydiods1,personal,cellsdata"}
Jul 03 16:55:17 2021-07-03T22:55:17.488Z INFO	pydio.grpc.data.objects	started
Jul 03 16:55:17 2021-07-03T22:55:17.488Z INFO	pydio.grpc.data.objects	Starting umbrella service pydio.grpc.data.objects. with sources {"sources": "local1"}
Jul 03 16:55:17 2021-07-03T22:55:17.489Z INFO	pydio.grpc.statics	started
Jul 03 16:55:17 2021-07-03T22:55:17.488Z INFO	mkdir /home/cloudron/.minio: read-only file system Unable to create configuration directories
Jul 03 16:55:17 2021-07-03T22:55:17.489Z INFO	file not found Failed to read root CAs (%v)
Jul 03 16:55:17 2021-07-03T22:55:17.491Z INFO	pydio.gateway.data	started
Jul 03 16:55:17 2021-07-03T22:55:17.491Z INFO	pydio.gateway.rest	started
Jul 03 16:55:17 2021-07-03T22:55:17.492Z INFO	pydio.grpc.docstore	started
Jul 03 16:55:17 2021-07-03T22:55:17.492Z INFO	pydio.grpc.log	started

hi, you seem to have sql migration issues : are you 100% sure that the DB is clean when you start?
Basically, these migration use a table where they store the “already applied migration scripts” versions, to compare and detect if new scripts are required to run (e.g. idm_user_idx_0.2.sql).